src.amberio.AMBER Member List

This is the complete list of members for src.amberio.AMBER, including all inherited members.

__init__(self, name="amber", kwargs)	src.amberio.AMBER
A	src.amberio.AMBER
absfrcmod	src.amberio.AMBER
absleap	src.amberio.AMBER
absmdin	src.amberio.AMBER
absmol2	src.amberio.AMBER
abspdb	src.amberio.AMBER
amberhome	src.amberio.AMBER
AtomLists	src.amberio.AMBER
AtomMask	src.amberio.AMBER
B	src.amberio.AMBER
callamber(self, command, stdin=None, print_to_screen=False, print_command=False, kwargs)	src.amberio.AMBER
energy(self)	src.amberio.AMBER
energy_dipole(self)	src.amberio.AMBER
energy_force(self)	src.amberio.AMBER
energy_force_one(self, shot)	src.amberio.AMBER
energy_rmsd(self, shot=0, optimize=True)	src.amberio.AMBER
evaluate_cpptraj(self, leap=True, traj_fnm=None, potential=False)	src.amberio.AMBER
evaluate_sander(self, leap=True, traj_fnm=None, snapshots=None)	src.amberio.AMBER
frcmod	src.amberio.AMBER
get_charges(self)	src.amberio.AMBER
have_pmemd_cuda	src.amberio.AMBER
interaction_energy(self, fraga, fragb)	src.amberio.AMBER
kineticE_cpptraj(self, leap=False, traj_fnm=None)	src.amberio.AMBER
leap(self, read_prmtop=False, count_mols=False, name=None, delcheck=False)	src.amberio.AMBER
leapcmd	src.amberio.AMBER
mdin	src.amberio.AMBER
mname	src.amberio.AMBER
mol	src.amberio.AMBER
mol2	src.amberio.AMBER
molecular_dynamics(self, nsteps, timestep, temperature=None, pressure=None, nequil=0, nsave=1000, minimize=True, anisotropic=False, threads=1, verbose=False, kwargs)	src.amberio.AMBER
multipole_moments(self, shot=0, optimize=True, polarizability=False)	src.amberio.AMBER
natoms	src.amberio.AMBER
normal_modes(self, shot=0, optimize=True)	src.amberio.AMBER
optimize(self, shot=0, method="newton", crit=1e-4)	src.amberio.AMBER
pbc	src.amberio.AMBER
prepare(self, pbc=False, kwargs)	src.amberio.AMBER
qmatoms	src.amberio.AMBER
readsrc(self, kwargs)	src.amberio.AMBER
setopts(self, kwargs)	src.amberio.AMBER
spath	src.amberio.AMBER
trajectory	src.amberio.AMBER
valkwd	src.amberio.AMBER