src.custom_io.Gen_Reader Class Reference

Finite state machine for parsing custom GROMACS force field files. More...

Inheritance diagram for src.custom_io.Gen_Reader:

Collaboration diagram for src.custom_io.Gen_Reader:

Public Member Functions
def	__init__ (self, fnm)
def	feed (self, line)
	Feed in a line. More...

Public Attributes
	sec
	The current section that we're in. More...
	pdict
	The parameter dictionary (defined in this file) More...
	itype
	suffix

Detailed Description

Finite state machine for parsing custom GROMACS force field files.

This class is instantiated when we begin to read in a file. The feed(line) method updates the state of the machine, giving it information like the residue we're currently on, the nonbonded interaction type, and the section that we're in. Using this information we can look up the interaction type and parameter type for building the parameter ID.

Definition at line 41 of file custom_io.py.

Constructor & Destructor Documentation

__init__()

def src.custom_io.Gen_Reader.__init__	(		self,
			fnm
	)

Definition at line 43 of file custom_io.py.

Member Function Documentation

feed()

def src.custom_io.Gen_Reader.feed	(		self,
			line
	)

Feed in a line.

Parameters

[in]

line

The line of data

Definition at line 57 of file custom_io.py.

Member Data Documentation

itype

src.custom_io.Gen_Reader.itype

Definition at line 60 of file custom_io.py.

pdict

src.custom_io.Gen_Reader.pdict

The parameter dictionary (defined in this file)

Definition at line 49 of file custom_io.py.

sec

src.custom_io.Gen_Reader.sec

The current section that we're in.

Definition at line 47 of file custom_io.py.

suffix

src.custom_io.Gen_Reader.suffix

Definition at line 79 of file custom_io.py.

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The documentation for this class was generated from the following file:

• custom_io.py